|
DNA/RNA Bioinformatics:
Cross-References: Protein
Bioinformatics
Genome
Bioinformatics
===========================================================================
Annotation:
Seqvista
Condons:
Codon Table
ESTs/Tandom Repeats:
EST Extractor
EST Sequence Database (NCBI)
TGEM EST Assembly Machine
Primers:
Primer3
Primer3
(MIT)
Primer generator
for mutagenesis
Tandom Repeat Finder
SNP Consortium
SNPNIH
USCS
Ensembl
NCBI
FASTA
LocusLink ExPASy
HGMD
HUGO MDI
Jpred
MAST
Moleculear Toolkit
NetOGlyc
OMIM (NCBI)
Phylip
(Pasteur)
Phylodendron
(IUBio)
PRINTS BLAST
Propsearch
PSSM
SAMT99
SWISS-MODEL
SWISS-PROT
TFSEARCH
UniGene (NCBI)
Webcutter
WebGene (ITBA)
PCR: Principles
of PCR
BonesLab
(degenerate PCR)
Boehringer (RT-PCR)
GeneHunter (Differential Display)
Competitive PCR
Real Time Primer Sets
RealTime Probe &
Primer Database
Ambion (Real Time PCR
basics)
Sequence Alignment:
BLAST
Multiple Sequence Alignment
Sequence Utilities
DbClustal
GenScan (MIT)
Multiple alignment
Clustalw
Sequence Assembly: (Assemble DNA
sequences (e.g., from sequencing) into one contiguous sequence)
CAP_EST Assembler at
IFOM
Sequence Conversion to Protein Sequence:
ExPasy NCBIs
ORF Finder
Sequence Submission:
Submit to GenBank (NCBI)
Sequence Analysis:
SEQhound
Small nucleotide polymorphisms
(SNPs):
NCBISNP
Splice sites:
Splice Site Prediction
by Neural Network
Maps of the Human Genome:
Whitehead
Human Genome DB
UCSC
3-D Structure:
Nucleic Acid Database
RNA interference: RNAi
database
|