Genome Bioinformatics: 

Cross-References:       Protein Bioinformatics                       DNA/RNA Bioinformatics        

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DNA Databases  BLAST   Genbank at NCBI    EMBL    DNA DDBJ   

LocusLink (NCBI) NIAS DNA BANK

Annotation on genes:  MedMiner   

Analysis of complete genomes:     PEDANT

Cloning/Enzymes:  BRENDA    SwissProt    Restriction Enzyme Database      Cloneit       DNA artist download   

Cut your DNA Sequence:     NEB Cutter    Web Cutter   

Vector contamination:  EMBL EBI    NCBI VecScreen       

Genes involved in Human Disease:     GeneCards    OMIN

Open Reading Frames (OPFs):     ORF Finder      ORF Finder (NCBI)    Expasy-translate    Sequence Manip Site   

Comparison of genomes:     Institute for Genomic Research    TIGR    Vista    PipMaker   

Sequence Submission:    GenBank Submissions (BankIt)      NCBI GenBank Examples    NCBI Sequin (This is software developed by NCBI which must be downloaded. Use this for sequences which are too short to submit online with BankIt or where you want more control over your submissions)    Sequin Help    Sequin Facts    EMBL (WebIn)   

Sequence Analysis: Metagene   

Sequence Conversion: (Convert sequence files from one particular format to another format)

 ReadSeq    Readseqimple    ReadseqBaylor    Readseqfinice    Readseqbioportal    readseqebi    Redseqbimas   

Specific genomes:    FlyBase     newsnetwork   

Wiring Diagrams of life:       KEGG   

Synthetic Biology: synthetic biology is the development of well-characterized biological components that can be easily assembled into larger functioning devices to accomplish many applications such as renewable energy and health.

Biobricks Registry of Biological Parts UCSF Lim Lab