Cross-References: Protein Bioinformatics Genome Bioinformatics

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Annotation: Seqvista

Condons:  Codon Table

ESTs/Tandom Repeats: EST Extractor EST Sequence Database (NCBI) TGEM EST Assembly Machine

Immunoglobulins: IMGT (links of CDR analysis and sequence alignment)

Primers: Primer3 Primer3 (MIT) Primer generator for mutagenesis

Tandom Repeat Finder SNP Consortium SNPNIH USCS Ensembl FASTA LocusLink ExPASy HGMD HUGO MDI Jpred MAST Moleculear Toolkit NetOGlyc OMIM (NCBI) Phylip (Pasteur) Phylodendron (IUBio) PRINTS BLAST Propsearch PSSM SAMT99 SWISS-MODEL SWISS-PROT TFSEARCH UniGene (NCBI) WebcutterWebGene (ITBA)

PCR: Principles of PCR BonesLab (degenerate PCR)    Boehringer (RT-PCR)    GeneHunter (Differential Display)    Competitive PCR Real Time Primer Sets RealTime Probe & Primer Database Ambion (Real Time PCR basics)

Sequence Alignment: 

BLAST Multiple Sequence Alignment Sequence Utilities DbClustal GenScan (MIT) Multiple alignmentClustalw

Sequence Assembly: (Assemble DNA sequences (e.g., from sequencing) into one contiguous sequence)

CAP_EST Assembler at IFOM

Sequence Conversion to Protein Sequence: ExPasy NCBIs ORF Finder 

Sequence Submission: Submit to GenBank (NCBI)

Sequence Analysis: SEQhound

Small nucleotide polymorphisms (SNPs): NCBISNP

Splice sites: Splice Site Prediction by Neural Network

Maps of the Human Genome: Whitehead Human Genome DB UCSC

3-D Structure: Nucleic Acid Database

RNA interference: RNAi database